b0eb968f2 Completely handle Matlab wrapping (#34) 4ad71812a Merge pull request #33 from borglab/fix/script-destination 0c832eed7 reverted from TYPE to DESTINATION for wrapper scripts 10e1efd6f Merge pull request #32 from ayushbaid/feature/pickle 55d5d7fbe ignoring pickle in matlab wrap 8d70c7fe2 adding newlines dee8aaee3 adding markers for pickling 46fc45d82 separating out the marker for pickle d37b8a972 Merge pull request #31 from ayushbaid/feature/pickle efd4a0fb4 removing tab 42fd231f3 adding newline for test compare 0aa316150 removing extra brackets 7fe1d7d0f adding pickle code to expected file 9c3ab7a8b fixing string format for new classname 2f89284e8 moving pickle support with the serialization code 5a8abc916 adding pickle support for select classes using serialization git-subtree-dir: wrap git-subtree-split: b0eb968f29a2261700361599cab2823221dd0f9d |
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.github/workflows | ||
cmake | ||
docs | ||
gtwrap | ||
pybind11 | ||
scripts | ||
sphinx | ||
tests | ||
utilities | ||
.gitignore | ||
CMakeLists.txt | ||
LICENSE | ||
README.md | ||
matlab.h | ||
pybind_wrapper.tpl.example | ||
requirements.txt | ||
setup.py |
README.md
WRAP
The wrap library wraps the GTSAM library into a Python library or MATLAB toolbox.
It was designed to be more general than just wrapping GTSAM. For notes on creating a wrap interface, see gtsam.h
for what features can be wrapped into a toolbox, as well as the current state of the toolbox for GTSAM.
Prerequisites: Pybind11 and pyparsing
- This library uses
pybind11
, which is included as a subdirectory in GTSAM. - The
interface_parser.py
in this library usespyparsing
to parse the interface filegtsam.h
. Please install it first in your current Python environment before attempting the build.
python3 -m pip install pyparsing
Getting Started
Clone this repository to your local machine and perform the standard CMake install:
mkdir build && cd build
cmake ..
make install # use sudo if needed
Using wrap
in your project is straightforward from here. In your CMakeLists.txt
file, you just need to add the following:
find_package(gtwrap)
pybind_wrap(${PROJECT_NAME}_py # target
${PROJECT_SOURCE_DIR}/cpp/${PROJECT_NAME}.h # interface header file
"${PROJECT_NAME}.cpp" # the generated cpp
"${PROJECT_NAME}" # module_name
"${PROJECT_MODULE_NAME}" # top namespace in the cpp file e.g. gtsam
"${ignore}" # ignore classes
${PROJECT_BINARY_DIR}/${PROJECT_NAME}.tpl # the wrapping template file
${PROJECT_NAME} # libs
"${PROJECT_NAME}" # dependencies
ON # use boost
)
For more information, please follow our tutorial.
Python Wrapper
WARNING: On macOS, you have to statically build GTSAM to use the wrapper.
-
Set
GTSAM_BUILD_PYTHON=ON
while configuring the build withcmake
. -
What you can do in the
build
folder:-
Just run python then import GTSAM and play around:
import gtsam gtsam.__dir__()
-
Run the unittests:
python -m unittest discover
-
Edit the unittests in
python/gtsam/*.py
and simply rerun the test. They were symlinked to<build_folder>/gtsam/*.py
to facilitate fast development.python -m unittest gtsam/tests/test_Pose3.py
- NOTE: You might need to re-runcmake ..
if files are deleted or added.
-
-
Do
make install
andcd <gtsam_install_folder>/python
. Here, you can:- Run the unittests:
python setup.py test
- Install
gtsam
to your current Python environment.python setup.py install
- NOTE: It's a good idea to create a virtual environment otherwise it will be installed in your system Python's site-packages.
- Run the unittests:
Matlab Wrapper
In the CMake, simply include the MatlabWrap.cmake
file.
include(MatlabWrap)
This cmake file defines functions for generating MATLAB wrappers.
wrap_and_install_library(interfaceHeader linkLibraries extraIncludeDirs extraMexFlags)
Generates wrap code and compiles the wrapper.
Usage example:
`wrap_and_install_library("lba.h" "" "" "")`
Arguments:
interfaceHeader
: The relative or absolute path to the wrapper interface definition file.linkLibraries
: Any additional libraries to link. Your project library (e.g.lba
), libraries it depends on, and any necessary MATLAB libraries will be linked automatically. So normally, leave this empty.extraIncludeDirs
: Any additional include paths required by dependent libraries that have not already been added by include_directories. Again, normally, leave this empty.extraMexFlags
: Any additional flags to pass to the compiler when building the wrap code. Normally, leave this empty.