Closer to building and tests running
Alex Cunningham
parent
a4276eb57a
commit
5b7d7b3793
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@ -76,7 +76,7 @@ GaussianFactorGraph liquefy(const typename BAYESTREE::sharedClique& root, bool s
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else
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result.push_back(splitFactor(conditional));
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}
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BOOST_FOREACH(const typename BAYESTREE::sharedClique& child, root->children())
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BOOST_FOREACH(typename BAYESTREE::sharedClique child, root->children)
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result.push_back(liquefy<BAYESTREE>(child, splitConditionals));
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return result;
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}
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@ -193,10 +193,10 @@ TEST( testBayesTreeOperations, liquefy ) {
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// Create smoother with 7 nodes
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Ordering ordering;
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ordering += X(1),X(3),X(5),X(7),X(2),X(6),X(4);
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GaussianFactorGraph smoother = createSmoother(7, ordering).first;
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GaussianFactorGraph smoother = createSmoother(7);
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// Create the Bayes tree
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GaussianBayesTree bayesTree = *GaussianMultifrontalSolver(smoother).eliminate();
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GaussianBayesTree bayesTree = *smoother.eliminateMultifrontal(ordering);
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// bayesTree.print("Full tree");
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SharedDiagonal unit6 = noiseModel::Diagonal::Sigmas(Vector_(ones(6)));
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@ -12,6 +12,8 @@
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#include <gtsam/base/TestableAssertions.h>
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#include <boost/assign/std/set.hpp>
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#include <boost/assign/std/list.hpp>
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#include <boost/assign/std/vector.hpp>
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#include <gtsam_unstable/linear/conditioning.h>
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@ -64,7 +66,8 @@ TEST( testConditioning, directed_elimination_singlefrontal ) {
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Index root_key = 0, removed_key = 1, remaining_parent = 2;
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Matrix R11 = Matrix_(1,1, 1.0), R22 = Matrix_(1,1, 3.0), S = Matrix_(1,1,-2.0), T = Matrix_(1,1,-3.0);
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Vector d0 = d.segment(0,1), d1 = d.segment(1,1), sigmas = Vector_(1, 1.0);
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Vector d0 = d.segment(0,1), d1 = d.segment(1,1);
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SharedDiagonal sigmas = noiseModel::Unit::Create(1);
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GaussianConditional::shared_ptr initConditional(new
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GaussianConditional(root_key, d0, R11, removed_key, S, remaining_parent, T, sigmas));
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@ -95,155 +98,156 @@ TEST( testConditioning, directed_elimination_singlefrontal ) {
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EXPECT(!actRemoveFrontal);
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}
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/* ************************************************************************* */
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TEST( testConditioning, directed_elimination_multifrontal ) {
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// Use top two rows from the previous example
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Index root_key = 0, removed_key = 1, remaining_parent = 2;
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Matrix R11 = R.topLeftCorner(2,2), S = R.block(0,2,2,1),
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Sprime = Matrix_(1,1,-2.0), R11prime = Matrix_(1,1, 1.0);
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Vector d1 = d.segment(0,2), sigmas1 = Vector_(1, 1.0), sigmas2 = Vector_(2, 1.0, 1.0);
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std::list<std::pair<Index, Matrix> > terms;
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terms += make_pair(root_key, Matrix(R11.col(0)));
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terms += make_pair(removed_key, Matrix(R11.col(1)));
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terms += make_pair(remaining_parent, S);
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GaussianConditional::shared_ptr initConditional(new GaussianConditional(terms, 2, d1, sigmas2));
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VectorValues solution;
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solution.insert(0, x.segment(0,1));
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solution.insert(1, x.segment(1,1));
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solution.insert(2, x.segment(2,1));
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std::set<Index> saved_indices;
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saved_indices += root_key, remaining_parent;
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GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
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GaussianConditional::shared_ptr expSummarized(new
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GaussianConditional(root_key, d.segment(0,1) - Sprime*x(1), R11prime, remaining_parent, R.block(0,2,1,1), sigmas1));
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CHECK(actSummarized);
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EXPECT(assert_equal(*expSummarized, *actSummarized, tol));
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}
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/* ************************************************************************* */
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TEST( testConditioning, directed_elimination_multifrontal_multidim ) {
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// use larger example, three frontal variables, dim = 2 each, two parents (one removed)
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// Vars: 0, 1, 2, 3, 4; frontal: 0, 1, 2. parents: 3, 4;
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// Remove 1, 3
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Matrix Rinit = Matrix_(6, 11,
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1.0, 0.0, 2.0, 0.0, 3.0, 0.0, 1.0, 0.0, -1.0, 0.0, 0.1,
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0.0, 1.0, 0.0, 2.0, 0.0, 3.0, 0.0, 1.0, 0.0, 1.0, 0.2,
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0.0, 0.0, 3.0, 0.0, 4.0, 0.0, 0.0,-1.0, 1.0, 0.0, 0.3,
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0.0, 0.0, 0.0, 4.0, 0.0, 4.0, 3.0, 2.0, 0.0, 9.0, 0.4,
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0.0, 0.0, 0.0, 0.0, 5.0, 0.0, 7.0, 0.0, 3.0, 0.0, 0.5,
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0.0, 0.0, 0.0, 0.0, 0.0, 4.0, 0.0, 8.0, 0.0, 6.0, 0.6);
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vector<size_t> init_dims; init_dims += 2, 2, 2, 2, 2, 1;
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GaussianConditional::rsd_type init_matrices(Rinit, init_dims.begin(), init_dims.end());
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Vector sigmas = ones(6);
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vector<size_t> init_keys; init_keys += 0, 1, 2, 3, 4;
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GaussianConditional::shared_ptr initConditional(new
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GaussianConditional(init_keys.begin(), init_keys.end(), 3, init_matrices, sigmas));
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// Construct a solution vector
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VectorValues solution;
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solution.insert(0, zero(2));
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solution.insert(1, zero(2));
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solution.insert(2, zero(2));
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solution.insert(3, Vector_(2, 1.0, 2.0));
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solution.insert(4, Vector_(2, 3.0, 4.0));
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initConditional->solveInPlace(solution);
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std::set<Index> saved_indices;
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saved_indices += 0, 2, 4;
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GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
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CHECK(actSummarized);
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Matrix Rexp = Matrix_(4, 7,
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1.0, 0.0, 3.0, 0.0, -1.0, 0.0, 0.1,
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0.0, 1.0, 0.0, 3.0, 0.0, 1.0, 0.2,
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0.0, 0.0, 5.0, 0.0, 3.0, 0.0, 0.5,
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0.0, 0.0, 0.0, 4.0, 0.0, 6.0, 0.6);
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// Update rhs
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Rexp.block(0, 6, 2, 1) -= Rinit.block(0, 2, 2, 2) * solution.at(1) + Rinit.block(0, 6, 2, 2) * solution.at(3);
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Rexp.block(2, 6, 2, 1) -= Rinit.block(4, 6, 2, 2) * solution.at(3);
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vector<size_t> exp_dims; exp_dims += 2, 2, 2, 1;
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GaussianConditional::rsd_type exp_matrices(Rexp, exp_dims.begin(), exp_dims.end());
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Vector exp_sigmas = ones(4);
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vector<size_t> exp_keys; exp_keys += 0, 2, 4;
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GaussianConditional expSummarized(exp_keys.begin(), exp_keys.end(), 2, exp_matrices, exp_sigmas);
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EXPECT(assert_equal(expSummarized, *actSummarized, tol));
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}
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/* ************************************************************************* */
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TEST( testConditioning, directed_elimination_multifrontal_multidim2 ) {
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// Example from LinearAugmentedSystem
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// 4 variables, last two in ordering kept - should be able to do this with no computation.
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vector<size_t> init_dims; init_dims += 3, 3, 2, 2, 1;
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//Full initial conditional: density on [3] [4] [5] [6]
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Matrix Rinit = Matrix_(10, 11,
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8.78422312, -0.0375455118, -0.0387376278, -5.059576, 0.0, 0.0, -0.0887200041, 0.00429643583, -0.130078263, 0.0193260727, 0.0,
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0.0, 8.46951839, 9.51456887, -0.0224291821, -5.24757636, 0.0, 0.0586258904, -0.173455825, 0.11090295, -0.330696013, 0.0,
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0.0, 0.0, 16.5539485, 0.00105159359, -2.35354497, -6.04085484, -0.0212095105, 0.0978729072, 0.00471054272, 0.0694956367, 0.0,
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0.0, 0.0, 0.0, 10.9015885, -0.0105694572, 0.000582715469, -0.0410535006, 0.00162772139, -0.0601433772, 0.0082824087,0.0,
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0.0, 0.0, 0.0, 0.0, 10.5531086, -1.34722553, 0.02438072, -0.0644224578, 0.0561372492, -0.148932792, 0.0,
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0.0, 0.0, 0.0, 0.0, 0.0, 21.4870439, -0.00443305851, 0.0234766354, 0.00484572411, 0.0101997356, 0.0,
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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.73892865, 0.0242046766, -0.0459727048, 0.0445071938, 0.0,
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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.61246954, 0.02287419, -0.102870789, 0.0,
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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.04823446, -0.302033014, 0.0,
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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.24068986, 0.0);
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Vector dinit = Vector_(10,
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-0.00186915, 0.00318554, 0.000592421, -0.000861, 0.00171528, 0.000274123, -0.0284011, 0.0275465, 0.0439795, -0.0222134);
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Rinit.rightCols(1) = dinit;
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Vector sigmas = ones(10);
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GaussianConditional::rsd_type init_matrices(Rinit, init_dims.begin(), init_dims.end());
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vector<size_t> init_keys; init_keys += 3, 4, 5, 6;
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GaussianConditional::shared_ptr initConditional(new
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GaussianConditional(init_keys.begin(), init_keys.end(), 4, init_matrices, sigmas));
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// Calculate a solution
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VectorValues solution;
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solution.insert(0, zero(3));
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solution.insert(1, zero(3));
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solution.insert(2, zero(3));
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solution.insert(3, zero(3));
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solution.insert(4, zero(3));
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solution.insert(5, zero(2));
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solution.insert(6, zero(2));
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initConditional->solveInPlace(solution);
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// Perform summarization
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std::set<Index> saved_indices;
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saved_indices += 5, 6;
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GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
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CHECK(actSummarized);
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// Create expected value on [5], [6]
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Matrix Rexp = Matrix_(4, 5,
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2.73892865, 0.0242046766, -0.0459727048, 0.0445071938, -0.0284011,
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0.0, 2.61246954, 0.02287419, -0.102870789, 0.0275465,
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0.0, 0.0, 2.04823446, -0.302033014, 0.0439795,
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0.0, 0.0, 0.0, 2.24068986, -0.0222134);
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Vector expsigmas = ones(4);
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vector<size_t> exp_dims; exp_dims += 2, 2, 1;
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GaussianConditional::rsd_type exp_matrices(Rexp, exp_dims.begin(), exp_dims.end());
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vector<size_t> exp_keys; exp_keys += 5, 6;
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GaussianConditional expConditional(exp_keys.begin(), exp_keys.end(), 2, exp_matrices, expsigmas);
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EXPECT(assert_equal(expConditional, *actSummarized, tol));
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}
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///* ************************************************************************* */
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//TEST( testConditioning, directed_elimination_multifrontal ) {
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// // Use top two rows from the previous example
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// Index root_key = 0, removed_key = 1, remaining_parent = 2;
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// Matrix R11 = R.topLeftCorner(2,2), S = R.block(0,2,2,1),
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// Sprime = Matrix_(1,1,-2.0), R11prime = Matrix_(1,1, 1.0);
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// Vector d1 = d.segment(0,2);
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// SharedDiagonal sigmas1 = noiseModel::Unit::Create(1), sigmas2 = noiseModel::Unit::Create(2);
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//
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//
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// std::list<std::pair<Index, Matrix> > terms;
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// terms += make_pair(root_key, Matrix(R11.col(0)));
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// terms += make_pair(removed_key, Matrix(R11.col(1)));
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// terms += make_pair(remaining_parent, S);
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// GaussianConditional::shared_ptr initConditional(new GaussianConditional(terms, 2, d1, sigmas2));
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//
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// VectorValues solution;
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// solution.insert(0, x.segment(0,1));
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// solution.insert(1, x.segment(1,1));
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// solution.insert(2, x.segment(2,1));
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//
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// std::set<Index> saved_indices;
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// saved_indices += root_key, remaining_parent;
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//
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// GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
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// GaussianConditional::shared_ptr expSummarized(new
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// GaussianConditional(root_key, d.segment(0,1) - Sprime*x(1), R11prime, remaining_parent, R.block(0,2,1,1), sigmas1));
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//
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// CHECK(actSummarized);
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// EXPECT(assert_equal(*expSummarized, *actSummarized, tol));
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//}
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//
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///* ************************************************************************* */
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//TEST( testConditioning, directed_elimination_multifrontal_multidim ) {
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// // use larger example, three frontal variables, dim = 2 each, two parents (one removed)
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// // Vars: 0, 1, 2, 3, 4; frontal: 0, 1, 2. parents: 3, 4;
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// // Remove 1, 3
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// Matrix Rinit = Matrix_(6, 11,
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// 1.0, 0.0, 2.0, 0.0, 3.0, 0.0, 1.0, 0.0, -1.0, 0.0, 0.1,
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// 0.0, 1.0, 0.0, 2.0, 0.0, 3.0, 0.0, 1.0, 0.0, 1.0, 0.2,
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// 0.0, 0.0, 3.0, 0.0, 4.0, 0.0, 0.0,-1.0, 1.0, 0.0, 0.3,
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// 0.0, 0.0, 0.0, 4.0, 0.0, 4.0, 3.0, 2.0, 0.0, 9.0, 0.4,
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// 0.0, 0.0, 0.0, 0.0, 5.0, 0.0, 7.0, 0.0, 3.0, 0.0, 0.5,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 4.0, 0.0, 8.0, 0.0, 6.0, 0.6);
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//
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// vector<size_t> init_dims; init_dims += 2, 2, 2, 2, 2, 1;
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// VerticalBlockMatrix init_matrices(init_dims, Rinit);
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// SharedDiagonal sigmas = noiseModel::Unit::Create(6);
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// vector<size_t> init_keys; init_keys += 0, 1, 2, 3, 4;
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// GaussianConditional::shared_ptr initConditional(new
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// GaussianConditional(init_keys, 3, init_matrices, sigmas));
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//
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// // Construct a solution vector
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// VectorValues solution;
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// solution.insert(0, zero(2));
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// solution.insert(1, zero(2));
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// solution.insert(2, zero(2));
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// solution.insert(3, Vector_(2, 1.0, 2.0));
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// solution.insert(4, Vector_(2, 3.0, 4.0));
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//
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// solution = initConditional->solve(solution);
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//
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// std::set<Index> saved_indices;
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// saved_indices += 0, 2, 4;
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//
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// GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
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// CHECK(actSummarized);
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//
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// Matrix Rexp = Matrix_(4, 7,
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// 1.0, 0.0, 3.0, 0.0, -1.0, 0.0, 0.1,
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// 0.0, 1.0, 0.0, 3.0, 0.0, 1.0, 0.2,
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// 0.0, 0.0, 5.0, 0.0, 3.0, 0.0, 0.5,
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// 0.0, 0.0, 0.0, 4.0, 0.0, 6.0, 0.6);
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//
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// // Update rhs
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// Rexp.block(0, 6, 2, 1) -= Rinit.block(0, 2, 2, 2) * solution.at(1) + Rinit.block(0, 6, 2, 2) * solution.at(3);
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// Rexp.block(2, 6, 2, 1) -= Rinit.block(4, 6, 2, 2) * solution.at(3);
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//
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// vector<size_t> exp_dims; exp_dims += 2, 2, 2, 1;
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// VerticalBlockMatrix exp_matrices(exp_dims, Rexp);
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// SharedDiagonal exp_sigmas = noiseModel::Unit::Create(4);
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// vector<size_t> exp_keys; exp_keys += 0, 2, 4;
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// GaussianConditional expSummarized(exp_keys, 2, exp_matrices, exp_sigmas);
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//
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// EXPECT(assert_equal(expSummarized, *actSummarized, tol));
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//}
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//
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///* ************************************************************************* */
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//TEST( testConditioning, directed_elimination_multifrontal_multidim2 ) {
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// // Example from LinearAugmentedSystem
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// // 4 variables, last two in ordering kept - should be able to do this with no computation.
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//
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// vector<size_t> init_dims; init_dims += 3, 3, 2, 2, 1;
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//
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// //Full initial conditional: density on [3] [4] [5] [6]
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// Matrix Rinit = Matrix_(10, 11,
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// 8.78422312, -0.0375455118, -0.0387376278, -5.059576, 0.0, 0.0, -0.0887200041, 0.00429643583, -0.130078263, 0.0193260727, 0.0,
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// 0.0, 8.46951839, 9.51456887, -0.0224291821, -5.24757636, 0.0, 0.0586258904, -0.173455825, 0.11090295, -0.330696013, 0.0,
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// 0.0, 0.0, 16.5539485, 0.00105159359, -2.35354497, -6.04085484, -0.0212095105, 0.0978729072, 0.00471054272, 0.0694956367, 0.0,
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// 0.0, 0.0, 0.0, 10.9015885, -0.0105694572, 0.000582715469, -0.0410535006, 0.00162772139, -0.0601433772, 0.0082824087,0.0,
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// 0.0, 0.0, 0.0, 0.0, 10.5531086, -1.34722553, 0.02438072, -0.0644224578, 0.0561372492, -0.148932792, 0.0,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 21.4870439, -0.00443305851, 0.0234766354, 0.00484572411, 0.0101997356, 0.0,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.73892865, 0.0242046766, -0.0459727048, 0.0445071938, 0.0,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.61246954, 0.02287419, -0.102870789, 0.0,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.04823446, -0.302033014, 0.0,
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// 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 2.24068986, 0.0);
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// Vector dinit = Vector_(10,
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// -0.00186915, 0.00318554, 0.000592421, -0.000861, 0.00171528, 0.000274123, -0.0284011, 0.0275465, 0.0439795, -0.0222134);
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// Rinit.rightCols(1) = dinit;
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// SharedDiagonal sigmas = noiseModel::Unit::Create(10);
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//
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// VerticalBlockMatrix init_matrices(init_dims, Rinit);
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// vector<size_t> init_keys; init_keys += 3, 4, 5, 6;
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// GaussianConditional::shared_ptr initConditional(new
|
||||
// GaussianConditional(init_keys, 4, init_matrices, sigmas));
|
||||
//
|
||||
// // Calculate a solution
|
||||
// VectorValues solution;
|
||||
// solution.insert(0, zero(3));
|
||||
// solution.insert(1, zero(3));
|
||||
// solution.insert(2, zero(3));
|
||||
// solution.insert(3, zero(3));
|
||||
// solution.insert(4, zero(3));
|
||||
// solution.insert(5, zero(2));
|
||||
// solution.insert(6, zero(2));
|
||||
//
|
||||
// solution = initConditional->solve(solution);
|
||||
//
|
||||
// // Perform summarization
|
||||
// std::set<Index> saved_indices;
|
||||
// saved_indices += 5, 6;
|
||||
//
|
||||
// GaussianConditional::shared_ptr actSummarized = conditionDensity(initConditional, saved_indices, solution);
|
||||
// CHECK(actSummarized);
|
||||
//
|
||||
// // Create expected value on [5], [6]
|
||||
// Matrix Rexp = Matrix_(4, 5,
|
||||
// 2.73892865, 0.0242046766, -0.0459727048, 0.0445071938, -0.0284011,
|
||||
// 0.0, 2.61246954, 0.02287419, -0.102870789, 0.0275465,
|
||||
// 0.0, 0.0, 2.04823446, -0.302033014, 0.0439795,
|
||||
// 0.0, 0.0, 0.0, 2.24068986, -0.0222134);
|
||||
// SharedDiagonal expsigmas = noiseModel::Unit::Create(4);
|
||||
//
|
||||
// vector<size_t> exp_dims; exp_dims += 2, 2, 1;
|
||||
// VerticalBlockMatrix exp_matrices(exp_dims, Rexp);
|
||||
// vector<size_t> exp_keys; exp_keys += 5, 6;
|
||||
// GaussianConditional expConditional(exp_keys, 2, exp_matrices, expsigmas);
|
||||
//
|
||||
// EXPECT(assert_equal(expConditional, *actSummarized, tol));
|
||||
//}
|
||||
|
||||
/* ************************************************************************* */
|
||||
int main() { TestResult tr; return TestRegistry::runAllTests(tr); }
|
||||
|
|
|
|||
Loading…
Reference in New Issue