Merge commit '69c480490e0bc18ea897f1c96d8dd0bdc9b50fd5' into 2.0_prep (trunk r9251)

Conflicts:
	gtsam/linear/SubgraphSolver.h
	tests/Makefile.am

gtsam.h

@@ -187,7 +187,6 @@ class Pose2 {
 class Pose3 {
 	Pose3();
 	Pose3(const gtsam::Rot3& r, const gtsam::Point3& t);
-	Pose3(Vector v);
 	Pose3(Matrix t);
 	Pose3(const gtsam::Pose2& pose2);
 	static gtsam::Pose3 Expmap(Vector v);
@@ -203,10 +202,33 @@ class Pose3 {
 	gtsam::Pose3 between(const gtsam::Pose3& p2);
 	gtsam::Pose3 retract(Vector v);
 	gtsam::Pose3 retractFirstOrder(Vector v);
+  Vector localCoordinates(const gtsam::Pose3& T2) const;
 	gtsam::Point3 translation() const;
 	gtsam::Rot3 rotation() const;
 };
 
+class CalibratedCamera {
+    
+    CalibratedCamera();
+    CalibratedCamera(const gtsam::Pose3& pose);
+    CalibratedCamera(const Vector& v);
+
+    void print(string s) const;
+    bool equals(const gtsam::Pose3& pose, double tol) const;
+
+    gtsam::Pose3 pose() const;
+
+    gtsam::CalibratedCamera compose(const gtsam::CalibratedCamera& c) const;
+    gtsam::CalibratedCamera inverse() const;
+    gtsam::CalibratedCamera level(const gtsam::Pose2& pose2, double height);
+    gtsam::CalibratedCamera retract(const Vector& d) const;
+    Vector localCoordinates(const gtsam::CalibratedCamera& T2) const;
+
+    gtsam::Point2 project(const gtsam::Point3& point) const;
+    static gtsam::Point2 project_to_camera(const gtsam::Point3& cameraPoint);
+};
+
+
 //*************************************************************************
 // inference
 //*************************************************************************

gtsam/base/LieVector.h

@@ -77,22 +77,33 @@ struct LieVector : public Vector, public DerivedValue<LieVector> {
 		return LieVector();
 	}
 
+	// Note: Manually specifying the 'gtsam' namespace for the optional Matrix arguments
+	// This is a work-around for linux g++ 4.6.1 that incorrectly selects the Eigen::Matrix class
+	// instead of the gtsam::Matrix class. This is related to deriving this class from an Eigen Vector
+	// as the other geometry objects (Point3, Rot3, etc.) have this problem
 	/** compose with another object */
-	inline LieVector compose(const LieVector& p) const {
+	inline LieVector compose(const LieVector& p,
+			boost::optional<gtsam::Matrix&> H1=boost::none,
+			boost::optional<gtsam::Matrix&> H2=boost::none) const {
+		if(H1) *H1 = eye(dim());
+		if(H2) *H2 = eye(p.dim());
+
 		return LieVector(vector() + p);
 	}
 
 	/** between operation */
 	inline LieVector between(const LieVector& l2,
-			boost::optional<Matrix&> H1=boost::none,
+			boost::optional<gtsam::Matrix&> H1=boost::none,
-			boost::optional<Matrix&> H2=boost::none) const {
+			boost::optional<gtsam::Matrix&> H2=boost::none) const {
 		if(H1) *H1 = -eye(dim());
 		if(H2) *H2 = eye(l2.dim());
 		return LieVector(l2.vector() - vector());
 	}
 
 	/** invert the object and yield a new one */
-	inline LieVector inverse() const {
+	inline LieVector inverse(boost::optional<gtsam::Matrix&> H=boost::none) const {
+		if(H) *H = -eye(dim());
+
 		return LieVector(-1.0 * vector());
 	}
 

gtsam/base/timing.cpp

@@ -16,8 +16,10 @@
  * @date 		Oct 5, 2010
  */
 
+#include <math.h>
 #include <stdio.h>
 #include <iostream>
+#include <iomanip>
 #include <sys/time.h>
 #include <stdlib.h>
 #include <boost/foreach.hpp>
@@ -41,6 +43,7 @@ void TimingOutline::add(size_t usecs) {
 	t_ += usecs;
 	tIt_ += usecs;
 	++ n_;
+  history_.push_back(usecs);
 }
 
 /* ************************************************************************* */
@@ -83,6 +86,44 @@ void TimingOutline::print(const std::string& outline) const {
 	}
 }
 
+void TimingOutline::print2(const std::string& outline) const {
+
+  const int w1 = 24, w2 = 3, w3 = 6, precision = 3;
+  const double selfTotal = double(t_)/(1000000.0),
+               selfMean = selfTotal/double(n_);
+  // const double childMean = double(time())/(1000000.0*n_);
+
+  // compute standard deviation
+  double acc = 0.0;
+  BOOST_FOREACH(const size_t &t, history_) {
+    const double tmp = double(t)/1000000.0 - selfMean ;
+    acc += (tmp*tmp);
+  }
+  const double selfStd = sqrt(acc);
+  const std::string label = label_ + ": " ;
+
+  if ( n_ == 0 ) {
+    std::cout << label << std::fixed << std::setprecision(precision) << double(time())/(1000000.0) << " seconds" << std::endl;
+  }
+  else {
+  std::cout << std::setw(w1) << label ;
+  std::cout << std::setiosflags(std::ios::right) << std::setw(w2) << n_ << " (times), "
+    << std::setiosflags(std::ios::right) << std::fixed << std::setw(w3) << std::setprecision(precision) << selfMean << " (mean), "
+    << std::setiosflags(std::ios::right) << std::fixed << std::setw(w3) << std::setprecision(precision) << selfStd  << " (std),"
+    << std::setiosflags(std::ios::right) << std::fixed << std::setw(w3) << std::setprecision(precision) << selfTotal  << " (total)"
+    //<< std::setprecision(precision) << std::setw(w3) << std::fixed << childMean << " (child-mean)"
+    << std::endl;
+  }
+
+  for(size_t i=0; i<children_.size(); ++i) {
+    if(children_[i]) {
+      std::string childOutline(outline);
+      childOutline += "  ";
+      children_[i]->print2(childOutline);
+    }
+  }
+}
+
 /* ************************************************************************* */
 const boost::shared_ptr<TimingOutline>& TimingOutline::child(size_t child, const std::string& label, const boost::weak_ptr<TimingOutline>& thisPtr) {
 	assert(thisPtr.lock().get() == this);

gtsam/base/timing.h

@@ -35,6 +35,7 @@ protected:
   size_t tMin_;
   size_t n_;
   std::string label_;
+  std::vector<size_t> history_;
   boost::weak_ptr<TimingOutline> parent_;
   std::vector<boost::shared_ptr<TimingOutline> > children_;
   struct timeval t0_;
@@ -50,6 +51,8 @@ public:
 
   void print(const std::string& outline = "") const;
 
+  void print2(const std::string& outline = "") const;
+
   const boost::shared_ptr<TimingOutline>& child(size_t child, const std::string& label, const boost::weak_ptr<TimingOutline>& thisPtr);
 
   void tic();
@@ -168,11 +171,17 @@ inline void ticPush_(const std::string& prefix, const std::string& id) {
   tic_(id);
 }
 void ticPop_(const std::string& prefix, const std::string& id);
+
 inline void tictoc_print_() {
   timing.print();
   timingRoot->print();
 }
 
+/* print mean and standard deviation */
+inline void tictoc_print2_() {
+  timingRoot->print2();
+}
+
 #ifdef ENABLE_TIMING
 inline double _tic() { return _tic_(); }
 inline double _toc(double t) { return _toc_(t); }

gtsam/inference/FactorGraph.h

@@ -138,6 +138,9 @@ template<class CONDITIONAL, class CLIQUE> class BayesTree;
 		/** return the number of factors and NULLS */
 		size_t size() const { return factors_.size();}
 
+		/** Simple check for an empty graph - faster than comparing size() to zero */
+		bool empty() const { return factors_.empty(); }
+
 		/** const cast to the underlying vector of factors */
 		operator const std::vector<sharedFactor>&() const { return factors_; }
 

gtsam/inference/VariableIndex.cpp

@@ -21,6 +21,8 @@
 
 namespace gtsam {
 
+using namespace std;
+
 /* ************************************************************************* */
 void VariableIndex::permute(const Permutation& permutation) {
 #ifndef NDEBUG
@@ -36,7 +38,7 @@ void VariableIndex::permute(const Permutation& permutation) {
 /* ************************************************************************* */
 bool VariableIndex::equals(const VariableIndex& other, double tol) const {
   if(this->nEntries_ == other.nEntries_ && this->nFactors_ == other.nFactors_) {
-    for(size_t var=0; var < std::max(this->index_.size(), other.index_.size()); ++var)
+    for(size_t var=0; var < max(this->index_.size(), other.index_.size()); ++var)
       if(var >= this->index_.size() || var >= other.index_.size()) {
         if(!((var >= this->index_.size() && other.index_[var].empty()) ||
             (var >= other.index_.size() && this->index_[var].empty())))
@@ -49,21 +51,33 @@ bool VariableIndex::equals(const VariableIndex& other, double tol) const {
 }
 
 /* ************************************************************************* */
-void VariableIndex::print(const std::string& str) const {
+void VariableIndex::print(const string& str) const {
-  std::cout << str << "\n";
+  cout << str << "\n";
-  std::cout << "nEntries = " << this->nEntries_ << ", nFactors = " << this->nFactors_ << "\n";
+  cout << "nEntries = " << nEntries() << ", nFactors = " << nFactors() << "\n";
   Index var = 0;
   BOOST_FOREACH(const Factors& variable, index_.container()) {
     Permutation::const_iterator rvar = find(index_.permutation().begin(), index_.permutation().end(), var);
     assert(rvar != index_.permutation().end());
-    std::cout << "var " << (rvar-index_.permutation().begin()) << ":";
+    cout << "var " << (rvar-index_.permutation().begin()) << ":";
-    BOOST_FOREACH(const size_t factor, variable) {
+    BOOST_FOREACH(const size_t factor, variable)
-      std::cout << " " << factor;
+      cout << " " << factor;
-    }
+    cout << "\n";
-    std::cout << "\n";
     ++ var;
   }
-  std::cout << std::flush;
+  cout << flush;
+}
+
+/* ************************************************************************* */
+void VariableIndex::outputMetisFormat(ostream& os) const {
+  os << size() << " " << nFactors() << "\n";
+  // run over variables, which will be hyper-edges.
+  BOOST_FOREACH(const Factors& variable, index_.container()) {
+  	// every variable is a hyper-edge covering its factors
+    BOOST_FOREACH(const size_t factor, variable)
+      os << (factor+1) << " "; // base 1
+    os << "\n";
+  }
+  os << flush;
 }
 
 }

gtsam/inference/VariableIndex.h

@@ -101,6 +101,12 @@ public:
   /** Print the variable index (for unit tests and debugging). */
   void print(const std::string& str = "VariableIndex: ") const;
 
+  /**
+   * Output dual hypergraph to Metis file format for use with hmetis
+   * In the dual graph, variables are hyperedges, factors are nodes.
+   */
+  void outputMetisFormat(std::ostream& os) const;
+
 
 	/// @}
 	/// @name Advanced Interface

gtsam/linear/IterativeOptimizationParameters.h

@@ -6,14 +6,12 @@
 
 #pragma once
 
-#include <vector>
+#include <string>
+#include <map>
 #include <boost/shared_ptr.hpp>
-#include <gtsam/linear/VectorValues.h>
 
 namespace gtsam {
 
-struct DimSpec;
-
 // a container for all related parameters
 struct IterativeOptimizationParameters {
 
@@ -27,83 +25,39 @@ public:
   } verbosityLevel;
 
 public:
-  int maxIterations_;
+  size_t minIterations_;
-  int reset_; // number of iterations before reset, for cg and gmres
+  size_t maxIterations_;
-  double epsilon_; // relative error
+  size_t reset_; // number of iterations before reset, for cg and gmres
+  double epsilon_rel_; // relative error
   double epsilon_abs_; // absolute error
   verbosityLevel verbosity_;
-  size_t nReduce_ ;
-  boost::shared_ptr<DimSpec> skeleton_spec_;
   bool est_cond_ ;
+  std::map<std::string, std::string> sandbox_;
 
 public:
-  IterativeOptimizationParameters() :
+  IterativeOptimizationParameters()
-    maxIterations_(100), reset_(101), epsilon_(1e-5), epsilon_abs_(1e-5),
+  : minIterations_(1), maxIterations_(500), reset_(501),
-        verbosity_(SILENT), nReduce_(0), skeleton_spec_(), est_cond_(false) {
+    epsilon_rel_(1e-3), epsilon_abs_(1e-3), verbosity_(SILENT), est_cond_(false) {}
-  }
 
   IterativeOptimizationParameters(
-      const IterativeOptimizationParameters &parameters) :
+      const IterativeOptimizationParameters &p) :
-    maxIterations_(parameters.maxIterations_), reset_(parameters.reset_),
+    minIterations_(p.minIterations_), maxIterations_(p.maxIterations_), reset_(p.reset_),
-        epsilon_(parameters.epsilon_), epsilon_abs_(parameters.epsilon_abs_),
+    epsilon_rel_(p.epsilon_rel_), epsilon_abs_(p.epsilon_abs_), verbosity_(p.verbosity_),
-        verbosity_(parameters.verbosity_),
+    est_cond_(p.est_cond_){ }
-        nReduce_(parameters.nReduce_),
-        skeleton_spec_(parameters.skeleton_spec_),
-        est_cond_(parameters.est_cond_){
-  }
 
-  IterativeOptimizationParameters(int maxIterations, double epsilon,
+  IterativeOptimizationParameters(size_t minIterations, size_t maxIterations, size_t reset,
-      double epsilon_abs, verbosityLevel verbosity = ERROR, int reset = -1, bool est_cond=false) :
+    double epsilon, double epsilon_abs, verbosityLevel verbosity = ERROR, bool est_cond = false) :
-    maxIterations_(maxIterations), reset_(reset), epsilon_(epsilon),
+    minIterations_(minIterations), maxIterations_(maxIterations), reset_(reset),
-        epsilon_abs_(epsilon_abs), verbosity_(verbosity),
+    epsilon_rel_(epsilon), epsilon_abs_(epsilon_abs), verbosity_(verbosity), est_cond_(est_cond) {}
-        nReduce_(0),
-        skeleton_spec_(),
-        est_cond_(est_cond) {
-    if (reset_ == -1)
-      reset_ = maxIterations_ + 1;
-  }
 
-  int maxIterations() const {
+  size_t minIterations() const { return minIterations_; }
-    return maxIterations_;
+  size_t maxIterations() const { return maxIterations_; }
-  }
+  size_t reset() const { return reset_; }
-  int reset() const {
+  double epsilon() const { return epsilon_rel_; }
-    return reset_;
+  double epsilon_rel() const { return epsilon_rel_; }
-  }
+  double epsilon_abs() const { return epsilon_abs_; }
-  double epsilon() const {
+  verbosityLevel verbosity() const { return verbosity_; }
-    return epsilon_;
+  bool est_cond() const { return est_cond_ ; }
-  }
-  double epsilon_abs() const {
-    return epsilon_abs_;
-  }
-  verbosityLevel verbosity() const {
-    return verbosity_;
-  }
-  bool est_cond() const {
-    return est_cond_ ;
-  }
-};
-
-struct DimSpec: public std::vector<size_t> {
-
-  typedef std::vector<size_t> Base;
-  typedef boost::shared_ptr<DimSpec> shared_ptr;
-
-  DimSpec() :
-    Base() {
-  }
-  DimSpec(size_t n) :
-    Base(n) {
-  }
-  DimSpec(size_t n, size_t init) :
-    Base(n, init) {
-  }
-  DimSpec(const VectorValues &V) :
-    Base(V.size()) {
-    const size_t n = V.size();
-    for (size_t i = 0; i < n; ++i) {
-      (*this)[i] = V[i].rows();
-    }
-  }
 };
 
 }

gtsam/linear/IterativeSolver.h

@@ -18,6 +18,7 @@
 
 #pragma once
 
+#include <boost/shared_ptr.hpp>
 #include <gtsam/linear/GaussianFactorGraph.h>
 #include <gtsam/inference/VariableIndex.h>
 #include <gtsam/linear/VectorValues.h>
@@ -29,44 +30,31 @@ class IterativeSolver {
 
 public:
 
+	typedef boost::shared_ptr<IterativeSolver> shared_ptr;
 	typedef IterativeOptimizationParameters Parameters;
-	typedef Parameters::shared_ptr sharedParameters;
 
 protected:
 
-	GaussianFactorGraph::shared_ptr graph_;
-	VariableIndex::shared_ptr variableIndex_;
 	Parameters::shared_ptr parameters_ ;
 
 public:
 
-  IterativeSolver(
+  IterativeSolver(): parameters_(new Parameters()) {}
-    const GaussianFactorGraph::shared_ptr& factorGraph,
-    const VariableIndex::shared_ptr& variableIndex):
-    graph_(factorGraph), variableIndex_(variableIndex),
-    parameters_(new Parameters()) { }
 
-  IterativeSolver(
+	IterativeSolver(const IterativeSolver &solver)
-    const GaussianFactorGraph::shared_ptr& factorGraph,
+	: parameters_(solver.parameters_) {}
-    const VariableIndex::shared_ptr& variableIndex,
-    const Parameters::shared_ptr& parameters):
-    graph_(factorGraph), variableIndex_(variableIndex), parameters_(parameters) { }
 
-	IterativeSolver():
+  IterativeSolver(const Parameters::shared_ptr& parameters)
-		parameters_(new IterativeOptimizationParameters()) {}
+  : parameters_(parameters) {}
 
-	IterativeSolver(const IterativeSolver &solver):
+	IterativeSolver(const Parameters &parameters)
-		parameters_(solver.parameters_) {}
+	:	parameters_(new Parameters(parameters)) {}
-
-	IterativeSolver(const IterativeOptimizationParameters &parameters):
-		parameters_(new IterativeOptimizationParameters(parameters)) {}
-
-	IterativeSolver(const sharedParameters parameters):
-		parameters_(parameters) {}
 
 	virtual ~IterativeSolver() {}
 
 	virtual VectorValues::shared_ptr optimize () = 0;
+
+	Parameters::shared_ptr parameters() { return parameters_ ; }
 };
 
 }

gtsam/linear/JacobianFactor.h

@@ -289,7 +289,7 @@ namespace gtsam {
 
   private:
 
-    // Friend HessianFactor to facilitate convertion constructors
+    // Friend HessianFactor to facilitate conversion constructors
     friend class HessianFactor;
 
     // Friend unit tests (see also forward declarations above)

gtsam/linear/SubgraphPreconditioner.cpp

@@ -1,150 +1,150 @@
-/* ----------------------------------------------------------------------------
+///* ----------------------------------------------------------------------------
-
+//
- * GTSAM Copyright 2010, Georgia Tech Research Corporation, 
+// * GTSAM Copyright 2010, Georgia Tech Research Corporation,
- * Atlanta, Georgia 30332-0415
+// * Atlanta, Georgia 30332-0415
- * All Rights Reserved
+// * All Rights Reserved
- * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
+// * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
-
+//
- * See LICENSE for the license information
+// * See LICENSE for the license information
-
+//
- * -------------------------------------------------------------------------- */
+// * -------------------------------------------------------------------------- */
-
+//
-/**
+///**
- * @file SubgraphPreconditioner.cpp
+// * @file SubgraphPreconditioner.cpp
- * @date Dec 31, 2009
+// * @date Dec 31, 2009
- * @author: Frank Dellaert
+// * @author: Frank Dellaert
- */
+// */
-
+//
-#include <boost/foreach.hpp>
+//#include <boost/foreach.hpp>
-#include <gtsam/linear/SubgraphPreconditioner.h>
+//#include <gtsam/linear/SubgraphPreconditioner.h>
-#include <gtsam/linear/JacobianFactor.h>
+//#include <gtsam/linear/JacobianFactor.h>
-#include <gtsam/linear/GaussianFactorGraph.h>
+//#include <gtsam/linear/GaussianFactorGraph.h>
-
+//
-using namespace std;
+//using namespace std;
-
+//
-namespace gtsam {
+//namespace gtsam {
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	SubgraphPreconditioner::SubgraphPreconditioner(const sharedFG& Ab1, const sharedFG& Ab2,
+//	SubgraphPreconditioner::SubgraphPreconditioner(const sharedFG& Ab1, const sharedFG& Ab2,
-			const sharedBayesNet& Rc1, const sharedValues& xbar) :
+//			const sharedBayesNet& Rc1, const sharedValues& xbar) :
-		Ab1_(Ab1), Ab2_(Ab2), Rc1_(Rc1), xbar_(xbar), b2bar_(gaussianErrors_(*Ab2_,*xbar)) {
+//		Ab1_(Ab1), Ab2_(Ab2), Rc1_(Rc1), xbar_(xbar), b2bar_(gaussianErrors_(*Ab2_,*xbar)) {
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// x = xbar + inv(R1)*y
+//	// x = xbar + inv(R1)*y
-	VectorValues SubgraphPreconditioner::x(const VectorValues& y) const {
+//	VectorValues SubgraphPreconditioner::x(const VectorValues& y) const {
-#ifdef VECTORBTREE
+//#ifdef VECTORBTREE
-		if (!y.cloned(*xbar_)) throw
+//		if (!y.cloned(*xbar_)) throw
-			invalid_argument("SubgraphPreconditioner::x: y needs to be cloned from xbar");
+//			invalid_argument("SubgraphPreconditioner::x: y needs to be cloned from xbar");
-#endif
+//#endif
-		VectorValues x = y;
+//		VectorValues x = y;
-		backSubstituteInPlace(*Rc1_,x);
+//		backSubstituteInPlace(*Rc1_,x);
-		x += *xbar_;
+//		x += *xbar_;
-		return x;
+//		return x;
-	}
+//	}
-
+//
-//    SubgraphPreconditioner SubgraphPreconditioner::add_priors(double sigma) const {
+////    SubgraphPreconditioner SubgraphPreconditioner::add_priors(double sigma) const {
-//    	SubgraphPreconditioner result = *this ;
+////    	SubgraphPreconditioner result = *this ;
-//    	result.Ab2_ = sharedFG(new GaussianFactorGraph(Ab2_->add_priors(sigma))) ;
+////    	result.Ab2_ = sharedFG(new GaussianFactorGraph(Ab2_->add_priors(sigma))) ;
-//    	return result ;
+////    	return result ;
-//    }
+////    }
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	double error(const SubgraphPreconditioner& sp, const VectorValues& y) {
+//	double error(const SubgraphPreconditioner& sp, const VectorValues& y) {
-
+//
-		Errors e(y);
+//		Errors e(y);
-		VectorValues x = sp.x(y);
+//		VectorValues x = sp.x(y);
-		Errors e2 = gaussianErrors(*sp.Ab2(),x);
+//		Errors e2 = gaussianErrors(*sp.Ab2(),x);
-		return 0.5 * (dot(e, e) + dot(e2,e2));
+//		return 0.5 * (dot(e, e) + dot(e2,e2));
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// gradient is y + inv(R1')*A2'*(A2*inv(R1)*y-b2bar),
+//	// gradient is y + inv(R1')*A2'*(A2*inv(R1)*y-b2bar),
-	VectorValues gradient(const SubgraphPreconditioner& sp, const VectorValues& y) {
+//	VectorValues gradient(const SubgraphPreconditioner& sp, const VectorValues& y) {
-		VectorValues x = sp.x(y); // x = inv(R1)*y
+//		VectorValues x = sp.x(y); // x = inv(R1)*y
-		Errors e2 = gaussianErrors(*sp.Ab2(),x);
+//		Errors e2 = gaussianErrors(*sp.Ab2(),x);
-		VectorValues gx2 = VectorValues::Zero(y);
+//		VectorValues gx2 = VectorValues::Zero(y);
-		gtsam::transposeMultiplyAdd(*sp.Ab2(),1.0,e2,gx2); // A2'*e2;
+//		gtsam::transposeMultiplyAdd(*sp.Ab2(),1.0,e2,gx2); // A2'*e2;
-		VectorValues gy2 = gtsam::backSubstituteTranspose(*sp.Rc1(), gx2); // inv(R1')*gx2
+//		VectorValues gy2 = gtsam::backSubstituteTranspose(*sp.Rc1(), gx2); // inv(R1')*gx2
-		return y + gy2;
+//		return y + gy2;
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// Apply operator A, A*y = [I;A2*inv(R1)]*y = [y; A2*inv(R1)*y]
+//	// Apply operator A, A*y = [I;A2*inv(R1)]*y = [y; A2*inv(R1)*y]
-	Errors operator*(const SubgraphPreconditioner& sp, const VectorValues& y) {
+//	Errors operator*(const SubgraphPreconditioner& sp, const VectorValues& y) {
-
+//
-		Errors e(y);
+//		Errors e(y);
-
+//
-		// Add A2 contribution
+//		// Add A2 contribution
-		VectorValues x = y; // TODO avoid ?
+//		VectorValues x = y; // TODO avoid ?
-		gtsam::backSubstituteInPlace(*sp.Rc1(), x); // x=inv(R1)*y
+//		gtsam::backSubstituteInPlace(*sp.Rc1(), x); // x=inv(R1)*y
-		Errors e2 = *sp.Ab2() * x; // A2*x
+//		Errors e2 = *sp.Ab2() * x; // A2*x
-		e.splice(e.end(), e2);
+//		e.splice(e.end(), e2);
-
+//
-		return e;
+//		return e;
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// In-place version that overwrites e
+//	// In-place version that overwrites e
-	void multiplyInPlace(const SubgraphPreconditioner& sp, const VectorValues& y, Errors& e) {
+//	void multiplyInPlace(const SubgraphPreconditioner& sp, const VectorValues& y, Errors& e) {
-
+//
-
+//
-		Errors::iterator ei = e.begin();
+//		Errors::iterator ei = e.begin();
-		for ( Index i = 0 ; i < y.size() ; ++i, ++ei ) {
+//		for ( Index i = 0 ; i < y.size() ; ++i, ++ei ) {
-			*ei = y[i];
+//			*ei = y[i];
-		}
+//		}
-
+//
-		// Add A2 contribution
+//		// Add A2 contribution
-		VectorValues x = y; // TODO avoid ?
+//		VectorValues x = y; // TODO avoid ?
-		gtsam::backSubstituteInPlace(*sp.Rc1(), x); // x=inv(R1)*y
+//		gtsam::backSubstituteInPlace(*sp.Rc1(), x); // x=inv(R1)*y
-		gtsam::multiplyInPlace(*sp.Ab2(),x,ei); // use iterator version
+//		gtsam::multiplyInPlace(*sp.Ab2(),x,ei); // use iterator version
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// Apply operator A', A'*e = [I inv(R1')*A2']*e = e1 + inv(R1')*A2'*e2
+//	// Apply operator A', A'*e = [I inv(R1')*A2']*e = e1 + inv(R1')*A2'*e2
-	VectorValues operator^(const SubgraphPreconditioner& sp, const Errors& e) {
+//	VectorValues operator^(const SubgraphPreconditioner& sp, const Errors& e) {
-
+//
-		Errors::const_iterator it = e.begin();
+//		Errors::const_iterator it = e.begin();
-		VectorValues y = sp.zero();
+//		VectorValues y = sp.zero();
-		for ( Index i = 0 ; i < y.size() ; ++i, ++it )
+//		for ( Index i = 0 ; i < y.size() ; ++i, ++it )
-			y[i] = *it ;
+//			y[i] = *it ;
-		sp.transposeMultiplyAdd2(1.0,it,e.end(),y);
+//		sp.transposeMultiplyAdd2(1.0,it,e.end(),y);
-		return y;
+//		return y;
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// y += alpha*A'*e
+//	// y += alpha*A'*e
-	void transposeMultiplyAdd
+//	void transposeMultiplyAdd
-		(const SubgraphPreconditioner& sp, double alpha, const Errors& e, VectorValues& y) {
+//		(const SubgraphPreconditioner& sp, double alpha, const Errors& e, VectorValues& y) {
-
+//
-
+//
-		Errors::const_iterator it = e.begin();
+//		Errors::const_iterator it = e.begin();
-		for ( Index i = 0 ; i < y.size() ; ++i, ++it ) {
+//		for ( Index i = 0 ; i < y.size() ; ++i, ++it ) {
-			const Vector& ei = *it;
+//			const Vector& ei = *it;
-			axpy(alpha,ei,y[i]);
+//			axpy(alpha,ei,y[i]);
-		}
+//		}
-		sp.transposeMultiplyAdd2(alpha,it,e.end(),y);
+//		sp.transposeMultiplyAdd2(alpha,it,e.end(),y);
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	// y += alpha*inv(R1')*A2'*e2
+//	// y += alpha*inv(R1')*A2'*e2
-	void SubgraphPreconditioner::transposeMultiplyAdd2 (double alpha,
+//	void SubgraphPreconditioner::transposeMultiplyAdd2 (double alpha,
-		Errors::const_iterator it, Errors::const_iterator end, VectorValues& y) const {
+//		Errors::const_iterator it, Errors::const_iterator end, VectorValues& y) const {
-
+//
-		// create e2 with what's left of e
+//		// create e2 with what's left of e
-		// TODO can we avoid creating e2 by passing iterator to transposeMultiplyAdd ?
+//		// TODO can we avoid creating e2 by passing iterator to transposeMultiplyAdd ?
-		Errors e2;
+//		Errors e2;
-		while (it != end)
+//		while (it != end)
-		e2.push_back(*(it++));
+//		e2.push_back(*(it++));
-
+//
-		VectorValues x = VectorValues::Zero(y); // x = 0
+//		VectorValues x = VectorValues::Zero(y); // x = 0
-		gtsam::transposeMultiplyAdd(*Ab2_,1.0,e2,x);   // x += A2'*e2
+//		gtsam::transposeMultiplyAdd(*Ab2_,1.0,e2,x);   // x += A2'*e2
-		axpy(alpha, gtsam::backSubstituteTranspose(*Rc1_, x), y); // y += alpha*inv(R1')*x
+//		axpy(alpha, gtsam::backSubstituteTranspose(*Rc1_, x), y); // y += alpha*inv(R1')*x
-	}
+//	}
-
+//
-	/* ************************************************************************* */
+//	/* ************************************************************************* */
-	void SubgraphPreconditioner::print(const std::string& s) const {
+//	void SubgraphPreconditioner::print(const std::string& s) const {
-		cout << s << endl;
+//		cout << s << endl;
-		Ab2_->print();
+//		Ab2_->print();
-	}
+//	}
-} // nsamespace gtsam
+//} // nsamespace gtsam

gtsam/linear/SubgraphPreconditioner.h

@@ -1,116 +1,116 @@
-/* ----------------------------------------------------------------------------
+///* ----------------------------------------------------------------------------
-
+//
- * GTSAM Copyright 2010, Georgia Tech Research Corporation, 
+// * GTSAM Copyright 2010, Georgia Tech Research Corporation,
- * Atlanta, Georgia 30332-0415
+// * Atlanta, Georgia 30332-0415
- * All Rights Reserved
+// * All Rights Reserved
- * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
+// * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
-
+//
- * See LICENSE for the license information
+// * See LICENSE for the license information
-
+//
- * -------------------------------------------------------------------------- */
+// * -------------------------------------------------------------------------- */
-
+//
-/**
+///**
- * @file SubgraphPreconditioner.h
+// * @file SubgraphPreconditioner.h
- * @date Dec 31, 2009
+// * @date Dec 31, 2009
- * @author Frank Dellaert
+// * @author Frank Dellaert
- */
+// */
-
+//
-#pragma once
+//#pragma once
-
+//
-#include <gtsam/linear/JacobianFactor.h>
+//#include <gtsam/linear/JacobianFactor.h>
-#include <gtsam/linear/GaussianBayesNet.h>
+//#include <gtsam/linear/GaussianBayesNet.h>
-#include <gtsam/nonlinear/Ordering.h> // FIXME shouldn't have nonlinear things in linear
+//#include <gtsam/nonlinear/Ordering.h> // FIXME shouldn't have nonlinear things in linear
-
+//
-namespace gtsam {
+//namespace gtsam {
-
+//
-	/**
+//	/**
-	 * Subgraph conditioner class, as explained in the RSS 2010 submission.
+//	 * Subgraph conditioner class, as explained in the RSS 2010 submission.
-	 * Starting with a graph A*x=b, we split it in two systems A1*x=b1 and A2*x=b2
+//	 * Starting with a graph A*x=b, we split it in two systems A1*x=b1 and A2*x=b2
-	 * We solve R1*x=c1, and make the substitution y=R1*x-c1.
+//	 * We solve R1*x=c1, and make the substitution y=R1*x-c1.
-	 * To use the class, give the Bayes Net R1*x=c1 and Graph A2*x=b2.
+//	 * To use the class, give the Bayes Net R1*x=c1 and Graph A2*x=b2.
-	 * Then solve for yhat using CG, and solve for xhat = system.x(yhat).
+//	 * Then solve for yhat using CG, and solve for xhat = system.x(yhat).
-	 */
+//	 */
-	class SubgraphPreconditioner {
+//	class SubgraphPreconditioner {
-
+//
-	public:
+//	public:
-		typedef boost::shared_ptr<const GaussianBayesNet> sharedBayesNet;
+//		typedef boost::shared_ptr<const GaussianBayesNet> sharedBayesNet;
-		typedef boost::shared_ptr<const FactorGraph<JacobianFactor> > sharedFG;
+//		typedef boost::shared_ptr<const FactorGraph<JacobianFactor> > sharedFG;
-		typedef boost::shared_ptr<const VectorValues> sharedValues;
+//		typedef boost::shared_ptr<const VectorValues> sharedValues;
-		typedef boost::shared_ptr<const Errors> sharedErrors;
+//		typedef boost::shared_ptr<const Errors> sharedErrors;
-
+//
-	private:
+//	private:
-		sharedFG Ab1_, Ab2_;
+//		sharedFG Ab1_, Ab2_;
-		sharedBayesNet Rc1_;
+//		sharedBayesNet Rc1_;
-		sharedValues xbar_;
+//		sharedValues xbar_;
-		sharedErrors b2bar_; /** b2 - A2*xbar */
+//		sharedErrors b2bar_; /** b2 - A2*xbar */
-
+//
-	public:
+//	public:
-
+//
-		SubgraphPreconditioner();
+//		SubgraphPreconditioner();
-		/**
+//		/**
-		 * Constructor
+//		 * Constructor
-		 * @param Ab1: the Graph A1*x=b1
+//		 * @param Ab1: the Graph A1*x=b1
-		 * @param Ab2: the Graph A2*x=b2
+//		 * @param Ab2: the Graph A2*x=b2
-		 * @param Rc1: the Bayes Net R1*x=c1
+//		 * @param Rc1: the Bayes Net R1*x=c1
-		 * @param xbar: the solution to R1*x=c1
+//		 * @param xbar: the solution to R1*x=c1
-		 */
+//		 */
-		SubgraphPreconditioner(const sharedFG& Ab1, const sharedFG& Ab2, const sharedBayesNet& Rc1,	const sharedValues& xbar);
+//		SubgraphPreconditioner(const sharedFG& Ab1, const sharedFG& Ab2, const sharedBayesNet& Rc1,	const sharedValues& xbar);
-
+//
-		/** Access Ab1 */
+//		/** Access Ab1 */
-		const sharedFG& Ab1() const { return Ab1_; }
+//		const sharedFG& Ab1() const { return Ab1_; }
-
+//
-		/** Access Ab2 */
+//		/** Access Ab2 */
-		const sharedFG& Ab2() const { return Ab2_; }
+//		const sharedFG& Ab2() const { return Ab2_; }
-
+//
-		/** Access Rc1 */
+//		/** Access Rc1 */
-		const sharedBayesNet& Rc1() const { return Rc1_; }
+//		const sharedBayesNet& Rc1() const { return Rc1_; }
-
+//
-	    /**
+//	    /**
-	     * Add zero-mean i.i.d. Gaussian prior terms to each variable
+//	     * Add zero-mean i.i.d. Gaussian prior terms to each variable
-	     * @param sigma Standard deviation of Gaussian
+//	     * @param sigma Standard deviation of Gaussian
-	     */
+//	     */
-//	    SubgraphPreconditioner add_priors(double sigma) const;
+////	    SubgraphPreconditioner add_priors(double sigma) const;
-
+//
-		/* x = xbar + inv(R1)*y */
+//		/* x = xbar + inv(R1)*y */
-		VectorValues x(const VectorValues& y) const;
+//		VectorValues x(const VectorValues& y) const;
-
+//
-		/* A zero VectorValues with the structure of xbar */
+//		/* A zero VectorValues with the structure of xbar */
-		VectorValues zero() const {
+//		VectorValues zero() const {
-			VectorValues V(VectorValues::Zero(*xbar_)) ;
+//			VectorValues V(VectorValues::Zero(*xbar_)) ;
-			return V ;
+//			return V ;
-		}
+//		}
-
+//
-		/**
+//		/**
-		 * Add constraint part of the error only, used in both calls above
+//		 * Add constraint part of the error only, used in both calls above
-		 * y += alpha*inv(R1')*A2'*e2
+//		 * y += alpha*inv(R1')*A2'*e2
-		 * Takes a range indicating e2 !!!!
+//		 * Takes a range indicating e2 !!!!
-		 */
+//		 */
-		void transposeMultiplyAdd2(double alpha, Errors::const_iterator begin,
+//		void transposeMultiplyAdd2(double alpha, Errors::const_iterator begin,
-				Errors::const_iterator end, VectorValues& y) const;
+//				Errors::const_iterator end, VectorValues& y) const;
-
+//
-			/** print the object */
+//			/** print the object */
-		void print(const std::string& s = "SubgraphPreconditioner") const;
+//		void print(const std::string& s = "SubgraphPreconditioner") const;
-	};
+//	};
-
+//
-  /* error, given y */
+//  /* error, given y */
-  double error(const SubgraphPreconditioner& sp, const VectorValues& y);
+//  double error(const SubgraphPreconditioner& sp, const VectorValues& y);
-
+//
-  /** gradient = y + inv(R1')*A2'*(A2*inv(R1)*y-b2bar) */
+//  /** gradient = y + inv(R1')*A2'*(A2*inv(R1)*y-b2bar) */
-  VectorValues gradient(const SubgraphPreconditioner& sp, const VectorValues& y);
+//  VectorValues gradient(const SubgraphPreconditioner& sp, const VectorValues& y);
-
+//
-  /** Apply operator A */
+//  /** Apply operator A */
-  Errors operator*(const SubgraphPreconditioner& sp, const VectorValues& y);
+//  Errors operator*(const SubgraphPreconditioner& sp, const VectorValues& y);
-
+//
-  /** Apply operator A in place: needs e allocated already */
+//  /** Apply operator A in place: needs e allocated already */
-  void multiplyInPlace(const SubgraphPreconditioner& sp, const VectorValues& y, Errors& e);
+//  void multiplyInPlace(const SubgraphPreconditioner& sp, const VectorValues& y, Errors& e);
-
+//
-    /** Apply operator A' */
+//    /** Apply operator A' */
-  VectorValues operator^(const SubgraphPreconditioner& sp, const Errors& e);
+//  VectorValues operator^(const SubgraphPreconditioner& sp, const Errors& e);
-
+//
-  /**
+//  /**
-   * Add A'*e to y
+//   * Add A'*e to y
-   *  y += alpha*A'*[e1;e2] = [alpha*e1; alpha*inv(R1')*A2'*e2]
+//   *  y += alpha*A'*[e1;e2] = [alpha*e1; alpha*inv(R1')*A2'*e2]
-   */
+//   */
-  void transposeMultiplyAdd(const SubgraphPreconditioner& sp, double alpha, const Errors& e, VectorValues& y);
+//  void transposeMultiplyAdd(const SubgraphPreconditioner& sp, double alpha, const Errors& e, VectorValues& y);
-
+//
-} // namespace gtsam
+//} // namespace gtsam

gtsam/linear/SubgraphSolver.cpp

@@ -1,50 +1,50 @@
-/* ----------------------------------------------------------------------------
+///* ----------------------------------------------------------------------------
-
+//
- * GTSAM Copyright 2010, Georgia Tech Research Corporation, 
+// * GTSAM Copyright 2010, Georgia Tech Research Corporation,
- * Atlanta, Georgia 30332-0415
+// * Atlanta, Georgia 30332-0415
- * All Rights Reserved
+// * All Rights Reserved
- * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
+// * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
-
+//
- * See LICENSE for the license information
+// * See LICENSE for the license information
-
+//
- * -------------------------------------------------------------------------- */
+// * -------------------------------------------------------------------------- */
-
+//
-#include <gtsam/linear/SubgraphSolver.h>
+//#include <gtsam/linear/SubgraphSolver.h>
-
+//
-using namespace std;
+//using namespace std;
-
+//
-namespace gtsam {
+//namespace gtsam {
-
+//
-/* split the gaussian factor graph Ab into Ab1 and Ab2 according to the map */
+///* split the gaussian factor graph Ab into Ab1 and Ab2 according to the map */
-bool split(const std::map<Index, Index> &M,
+//bool split(const std::map<Index, Index> &M,
-		const GaussianFactorGraph &Ab,
+//		const GaussianFactorGraph &Ab,
-		GaussianFactorGraph &Ab1,
+//		GaussianFactorGraph &Ab1,
-		GaussianFactorGraph &Ab2) {
+//		GaussianFactorGraph &Ab2) {
-
+//
-	Ab1 = GaussianFactorGraph();
+//	Ab1 = GaussianFactorGraph();
-	Ab2 = GaussianFactorGraph();
+//	Ab2 = GaussianFactorGraph();
-
+//
-	for ( size_t i = 0 ; i < Ab.size() ; ++i ) {
+//	for ( size_t i = 0 ; i < Ab.size() ; ++i ) {
-
+//
-		boost::shared_ptr<GaussianFactor> factor = Ab[i] ;
+//		boost::shared_ptr<GaussianFactor> factor = Ab[i] ;
-
+//
-		if (factor->keys().size() > 2)
+//		if (factor->keys().size() > 2)
-			throw(invalid_argument("split: only support factors with at most two keys"));
+//			throw(invalid_argument("split: only support factors with at most two keys"));
-		if (factor->keys().size() == 1) {
+//		if (factor->keys().size() == 1) {
-			Ab1.push_back(factor);
+//			Ab1.push_back(factor);
-			Ab2.push_back(factor);
+//			Ab2.push_back(factor);
-			continue;
+//			continue;
-		}
+//		}
-		Index key1 = factor->keys()[0];
+//		Index key1 = factor->keys()[0];
-		Index key2 = factor->keys()[1];
+//		Index key2 = factor->keys()[1];
-
+//
-		if ((M.find(key1) != M.end() && M.find(key1)->second == key2) ||
+//		if ((M.find(key1) != M.end() && M.find(key1)->second == key2) ||
-				(M.find(key2) != M.end() && M.find(key2)->second == key1))
+//				(M.find(key2) != M.end() && M.find(key2)->second == key1))
-			Ab1.push_back(factor);
+//			Ab1.push_back(factor);
-		else
+//		else
-			Ab2.push_back(factor);
+//			Ab2.push_back(factor);
-	}
+//	}
-	return true ;
+//	return true ;
-}
+//}
-
+//
-} // \namespace gtsam
+//} // \namespace gtsam

gtsam/linear/SubgraphSolver.h

@@ -1,101 +1,100 @@
-/* ----------------------------------------------------------------------------
+///* ----------------------------------------------------------------------------
-
+//
- * GTSAM Copyright 2010, Georgia Tech Research Corporation, 
+// * GTSAM Copyright 2010, Georgia Tech Research Corporation,
- * Atlanta, Georgia 30332-0415
+// * Atlanta, Georgia 30332-0415
- * All Rights Reserved
+// * All Rights Reserved
- * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
+// * Authors: Frank Dellaert, et al. (see THANKS for the full author list)
-
+//
- * See LICENSE for the license information
+// * See LICENSE for the license information
-
+//
- * -------------------------------------------------------------------------- */
+// * -------------------------------------------------------------------------- */
-
+//
-#pragma once
+//#pragma once
-
+//
-#include <boost/make_shared.hpp>
+//#include <boost/make_shared.hpp>
-
+//
-#include <gtsam/linear/GaussianFactorGraph.h>
+//#include <gtsam/linear/GaussianFactorGraph.h>
-#include <gtsam/linear/IterativeSolver.h>
+//#include <gtsam/linear/IterativeSolver.h>
-#include <gtsam/linear/SubgraphPreconditioner.h>
+//#include <gtsam/linear/SubgraphPreconditioner.h>
-#include <gtsam/nonlinear/Values.h>
+//
-
+//namespace gtsam {
-namespace gtsam {
+//
-
+///* split the gaussian factor graph Ab into Ab1 and Ab2 according to the map */
-/* split the gaussian factor graph Ab into Ab1 and Ab2 according to the map */
+//bool split(const std::map<Index, Index> &M,
-bool split(const std::map<Index, Index> &M,
+//		const GaussianFactorGraph &Ab,
-		const GaussianFactorGraph &Ab,
+//		GaussianFactorGraph &Ab1,
-		GaussianFactorGraph &Ab1,
+//		GaussianFactorGraph &Ab2);
-		GaussianFactorGraph &Ab2);
+//
-
+///**
-/**
+// * A nonlinear system solver using subgraph preconditioning conjugate gradient
- * A nonlinear system solver using subgraph preconditioning conjugate gradient
+// * Concept NonLinearSolver<G,T,L> implements
- * Concept NonLinearSolver<G,T,L> implements
+// *   linearize: G * T -> L
- *   linearize: G * T -> L
+// *   solve : L -> VectorValues
- *   solve : L -> VectorValues
+// */
- */
+//template<class GRAPH, class LINEAR, class VALUES>
-template<class GRAPH, class LINEAR, class KEY>
+//class SubgraphSolver : public IterativeSolver {
-class SubgraphSolver : public IterativeSolver {
+//
-
+//private:
-private:
 //	typedef typename VALUES::Key Key;
-	typedef typename GRAPH::Pose Pose;
+//	typedef typename GRAPH::Pose Pose;
-	typedef typename GRAPH::Constraint Constraint;
+//	typedef typename GRAPH::Constraint Constraint;
-
+//
-	typedef boost::shared_ptr<const SubgraphSolver> shared_ptr ;
+//	typedef boost::shared_ptr<const SubgraphSolver> shared_ptr ;
-	typedef boost::shared_ptr<Ordering> shared_ordering ;
+//	typedef boost::shared_ptr<Ordering> shared_ordering ;
-	typedef boost::shared_ptr<GRAPH> shared_graph ;
+//	typedef boost::shared_ptr<GRAPH> shared_graph ;
-	typedef boost::shared_ptr<LINEAR> shared_linear ;
+//	typedef boost::shared_ptr<LINEAR> shared_linear ;
-	typedef boost::shared_ptr<Values> shared_values ;
+//	typedef boost::shared_ptr<VALUES> shared_values ;
-	typedef boost::shared_ptr<SubgraphPreconditioner> shared_preconditioner ;
+//	typedef boost::shared_ptr<SubgraphPreconditioner> shared_preconditioner ;
-	typedef std::map<Index,Index> mapPairIndex ;
+//	typedef std::map<Index,Index> mapPairIndex ;
-
+//
-	/* the ordering derived from the spanning tree */
+//	/* the ordering derived from the spanning tree */
-	shared_ordering ordering_;
+//	shared_ordering ordering_;
-
+//
-	/* the indice of two vertices in the gaussian factor graph */
+//	/* the indice of two vertices in the gaussian factor graph */
-	mapPairIndex pairs_;
+//	mapPairIndex pairs_;
-
+//
-	/* preconditioner */
+//	/* preconditioner */
-	shared_preconditioner pc_;
+//	shared_preconditioner pc_;
-
+//
-	/* flag for direct solver - either QR or LDL */
+//	/* flag for direct solver - either QR or LDL */
-	bool useQR_;
+//	bool useQR_;
-
+//
-public:
+//public:
-
+//
-	SubgraphSolver(const GRAPH& G, const Values& theta0, const Parameters &parameters = Parameters(), bool useQR = false):
+//	SubgraphSolver(const GRAPH& G, const VALUES& theta0, const Parameters &parameters = Parameters(), bool useQR = false):
-		IterativeSolver(parameters), useQR_(useQR) { initialize(G,theta0); }
+//		IterativeSolver(parameters), useQR_(useQR) { initialize(G,theta0); }
-
+//
-	SubgraphSolver(const LINEAR& GFG) {
+//	SubgraphSolver(const LINEAR& GFG) {
-		std::cout << "[SubgraphSolver] Unexpected usage.." << std::endl;
+//		std::cout << "[SubgraphSolver] Unexpected usage.." << std::endl;
-		throw std::runtime_error("SubgraphSolver: gaussian factor graph initialization not supported");
+//		throw std::runtime_error("SubgraphSolver: gaussian factor graph initialization not supported");
-	}
+//	}
-
+//
-	SubgraphSolver(const shared_linear& GFG, const boost::shared_ptr<VariableIndex>& structure, bool useQR = false) {
+//	SubgraphSolver(const shared_linear& GFG, const boost::shared_ptr<VariableIndex>& structure, bool useQR = false) {
-		std::cout << "[SubgraphSolver] Unexpected usage.." << std::endl;
+//		std::cout << "[SubgraphSolver] Unexpected usage.." << std::endl;
-		throw std::runtime_error("SubgraphSolver: gaussian factor graph and variable index initialization not supported");
+//		throw std::runtime_error("SubgraphSolver: gaussian factor graph and variable index initialization not supported");
-	}
+//	}
-
+//
-	SubgraphSolver(const SubgraphSolver& solver) :
+//	SubgraphSolver(const SubgraphSolver& solver) :
-		IterativeSolver(solver), ordering_(solver.ordering_), pairs_(solver.pairs_), pc_(solver.pc_), useQR_(solver.useQR_) {}
+//		IterativeSolver(solver), ordering_(solver.ordering_), pairs_(solver.pairs_), pc_(solver.pc_), useQR_(solver.useQR_) {}
-
+//
-	SubgraphSolver(shared_ordering ordering,
+//	SubgraphSolver(shared_ordering ordering,
-			mapPairIndex pairs,
+//			mapPairIndex pairs,
-			shared_preconditioner pc,
+//			shared_preconditioner pc,
-			sharedParameters parameters = boost::make_shared<Parameters>(),
+//			sharedParameters parameters = boost::make_shared<Parameters>(),
-			bool useQR = true) :
+//			bool useQR = true) :
-				IterativeSolver(parameters), ordering_(ordering), pairs_(pairs), pc_(pc), useQR_(useQR) {}
+//				IterativeSolver(parameters), ordering_(ordering), pairs_(pairs), pc_(pc), useQR_(useQR) {}
-
+//
-	void replaceFactors(const typename LINEAR::shared_ptr &graph);
+//	void replaceFactors(const typename LINEAR::shared_ptr &graph);
-	VectorValues::shared_ptr optimize() const;
+//	VectorValues::shared_ptr optimize() ;
-	shared_ordering ordering() const { return ordering_; }
+//	shared_ordering ordering() const { return ordering_; }
-
+//
-protected:
+//protected:
-	void initialize(const GRAPH& G, const Values& theta0);
+//	void initialize(const GRAPH& G, const VALUES& theta0);
-
+//
-private:
+//private:
-	SubgraphSolver():IterativeSolver(){}
+//	SubgraphSolver():IterativeSolver(){}
-};
+//};
-
+//
-} // namespace gtsam
+//} // namespace gtsam
-
+//
-#include <gtsam/linear/SubgraphSolver-inl.h>
+//#include <gtsam/linear/SubgraphSolver-inl.h>

wrap/Class.cpp

@@ -51,7 +51,7 @@ void Class::matlab_proxy(const string& classFile) const {
   file.oss << "end" << endl;
 
   // close file
-  file.emit(false);
+  file.emit(true);
 }
 
 /* ************************************************************************* */

wrap/FileWriter.cpp

@@ -8,12 +8,10 @@
 #include "FileWriter.h"
 #include "utilities.h"
 
-#include <boost/date_time/gregorian/gregorian.hpp>
-
 #include <fstream>
+#include <iostream>
 
 using namespace std;
-using namespace boost::gregorian;
 using namespace wrap;
 
 /* ************************************************************************* */
@@ -41,10 +39,8 @@ void FileWriter::emit(bool add_header, bool force_overwrite) const {
 		if (!ofs) throw CantOpenFile(filename_);
 
 		// header
-		if (add_header) {
+		if (add_header)
-			date today = day_clock::local_day();
+			ofs << comment_str_ << " automatically generated by wrap" << endl;
-			ofs << comment_str_ << " automatically generated by wrap on " << today << endl;
-		}
 
 		// dump in stringstream
 		ofs << new_contents;

wrap/Method.cpp

@@ -42,7 +42,7 @@ void Method::matlab_mfile(const string& classPath) const {
   file.oss << "end" << endl;
 
   // close file
-  file.emit(false);
+  file.emit(true);
 }
 
 /* ************************************************************************* */

wrap/StaticMethod.cpp

@@ -43,7 +43,7 @@ void StaticMethod::matlab_mfile(const string& toolboxPath, const string& classNa
   file.oss << "end" << endl;
 
   // close file
-  file.emit(false);
+  file.emit(true);
 }
 
 /* ************************************************************************* */

wrap/tests/expected/@Point2/Point2.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef Point2
   properties
     self = 0

wrap/tests/expected/@Point2/argChar.cpp

@@ -0,0 +1,11 @@
+// automatically generated by wrap
+#include <wrap/matlab.h>
+#include <Point2.h>
+using namespace geometry;
+void mexFunction(int nargout, mxArray *out[], int nargin, const mxArray *in[])
+{
+  checkArguments("argChar",nargout,nargin-1,1);
+  shared_ptr<Point2> self = unwrap_shared_ptr< Point2 >(in[0],"Point2");
+  char a = unwrap< char >(in[1]);
+  self->argChar(a);
+}

wrap/tests/expected/@Point2/argChar.m

@@ -0,0 +1,5 @@
+ automatically generated by wrap
+function result = argChar(obj,a)
+% usage: obj.argChar(a)
+  error('need to compile argChar.cpp');
+end

wrap/tests/expected/@Point2/dim.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/@Point2/dim.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = dim(obj)
 % usage: obj.dim()
   error('need to compile dim.cpp');

wrap/tests/expected/@Point2/returnChar.cpp

@@ -0,0 +1,11 @@
+// automatically generated by wrap
+#include <wrap/matlab.h>
+#include <Point2.h>
+using namespace geometry;
+void mexFunction(int nargout, mxArray *out[], int nargin, const mxArray *in[])
+{
+  checkArguments("returnChar",nargout,nargin-1,0);
+  shared_ptr<Point2> self = unwrap_shared_ptr< Point2 >(in[0],"Point2");
+  char result = self->returnChar();
+  out[0] = wrap< char >(result);
+}

wrap/tests/expected/@Point2/returnChar.m

@@ -0,0 +1,5 @@
+ automatically generated by wrap
+function result = returnChar(obj)
+% usage: obj.returnChar()
+  error('need to compile returnChar.cpp');
+end

wrap/tests/expected/@Point2/vectorConfusion.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/@Point2/vectorConfusion.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = vectorConfusion(obj)
 % usage: obj.vectorConfusion()
   error('need to compile vectorConfusion.cpp');

wrap/tests/expected/@Point2/x.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/@Point2/x.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = x(obj)
 % usage: obj.x()
   error('need to compile x.cpp');

wrap/tests/expected/@Point2/y.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/@Point2/y.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = y(obj)
 % usage: obj.y()
   error('need to compile y.cpp');

wrap/tests/expected/@Point3/Point3.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef Point3
   properties
     self = 0

wrap/tests/expected/@Point3/norm.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point3.h>
 using namespace geometry;

wrap/tests/expected/@Point3/norm.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = norm(obj)
 % usage: obj.norm()
   error('need to compile norm.cpp');

wrap/tests/expected/@Test/Test.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef Test
   properties
     self = 0

wrap/tests/expected/@Test/arg_EigenConstRef.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/arg_EigenConstRef.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = arg_EigenConstRef(obj,value)
 % usage: obj.arg_EigenConstRef(value)
   error('need to compile arg_EigenConstRef.cpp');

wrap/tests/expected/@Test/create_MixedPtrs.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/create_MixedPtrs.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function [first,second] = create_MixedPtrs(obj)
 % usage: obj.create_MixedPtrs()
   error('need to compile create_MixedPtrs.cpp');

wrap/tests/expected/@Test/create_ptrs.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/create_ptrs.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function [first,second] = create_ptrs(obj)
 % usage: obj.create_ptrs()
   error('need to compile create_ptrs.cpp');

wrap/tests/expected/@Test/print.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/print.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = print(obj)
 % usage: obj.print()
   error('need to compile print.cpp');

wrap/tests/expected/@Test/return_Point2Ptr.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_Point2Ptr.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_Point2Ptr(obj,value)
 % usage: obj.return_Point2Ptr(value)
   error('need to compile return_Point2Ptr.cpp');

wrap/tests/expected/@Test/return_Test.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_Test.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_Test(obj,value)
 % usage: obj.return_Test(value)
   error('need to compile return_Test.cpp');

wrap/tests/expected/@Test/return_TestPtr.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_TestPtr.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_TestPtr(obj,value)
 % usage: obj.return_TestPtr(value)
   error('need to compile return_TestPtr.cpp');

wrap/tests/expected/@Test/return_bool.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_bool.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_bool(obj,value)
 % usage: obj.return_bool(value)
   error('need to compile return_bool.cpp');

wrap/tests/expected/@Test/return_double.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_double.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_double(obj,value)
 % usage: obj.return_double(value)
   error('need to compile return_double.cpp');

wrap/tests/expected/@Test/return_field.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_field.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_field(obj,t)
 % usage: obj.return_field(t)
   error('need to compile return_field.cpp');

wrap/tests/expected/@Test/return_int.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_int.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_int(obj,value)
 % usage: obj.return_int(value)
   error('need to compile return_int.cpp');

wrap/tests/expected/@Test/return_matrix1.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_matrix1.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_matrix1(obj,value)
 % usage: obj.return_matrix1(value)
   error('need to compile return_matrix1.cpp');

wrap/tests/expected/@Test/return_matrix2.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_matrix2.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_matrix2(obj,value)
 % usage: obj.return_matrix2(value)
   error('need to compile return_matrix2.cpp');

wrap/tests/expected/@Test/return_pair.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_pair.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function [first,second] = return_pair(obj,v,A)
 % usage: obj.return_pair(v,A)
   error('need to compile return_pair.cpp');

wrap/tests/expected/@Test/return_ptrs.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_ptrs.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function [first,second] = return_ptrs(obj,p1,p2)
 % usage: obj.return_ptrs(p1,p2)
   error('need to compile return_ptrs.cpp');

wrap/tests/expected/@Test/return_size_t.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_size_t.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_size_t(obj,value)
 % usage: obj.return_size_t(value)
   error('need to compile return_size_t.cpp');

wrap/tests/expected/@Test/return_string.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_string.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_string(obj,value)
 % usage: obj.return_string(value)
   error('need to compile return_string.cpp');

wrap/tests/expected/@Test/return_vector1.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_vector1.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_vector1(obj,value)
 % usage: obj.return_vector1(value)
   error('need to compile return_vector1.cpp');

wrap/tests/expected/@Test/return_vector2.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/@Test/return_vector2.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = return_vector2(obj,value)
 % usage: obj.return_vector2(value)
   error('need to compile return_vector2.cpp');

wrap/tests/expected/Makefile

@@ -1,4 +1,4 @@
-# automatically generated by wrap on 2012-Jan-23
+# automatically generated by wrap
 
 MEX = mex
 MEXENDING = mexa64

wrap/tests/expected/Point3_StaticFunctionRet.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point3.h>
 using namespace geometry;

wrap/tests/expected/Point3_StaticFunctionRet.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = Point3_StaticFunctionRet(z)
 % usage: x = Point3_StaticFunctionRet(z)
   error('need to compile Point3_StaticFunctionRet.cpp');

wrap/tests/expected/Point3_staticFunction.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point3.h>
 using namespace geometry;

wrap/tests/expected/Point3_staticFunction.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = Point3_staticFunction()
 % usage: x = Point3_staticFunction()
   error('need to compile Point3_staticFunction.cpp');

wrap/tests/expected/make_geometry.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-23
+% automatically generated by wrap
 echo on
 
 toolboxpath = mfilename('fullpath');

wrap/tests/expected/new_Point2_.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/new_Point2_.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-15
+% automatically generated by wrap
 function result = new_Point2_(obj)
   error('need to compile new_Point2_.cpp');
 end

wrap/tests/expected/new_Point2_dd.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point2.h>
 using namespace geometry;

wrap/tests/expected/new_Point2_dd.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-15
+% automatically generated by wrap
 function result = new_Point2_dd(obj,x,y)
   error('need to compile new_Point2_dd.cpp');
 end

wrap/tests/expected/new_Point3_ddd.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <Point3.h>
 using namespace geometry;

wrap/tests/expected/new_Point3_ddd.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-15
+% automatically generated by wrap
 function result = new_Point3_ddd(obj,x,y,z)
   error('need to compile new_Point3_ddd.cpp');
 end

wrap/tests/expected/new_Test_.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/new_Test_.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-15
+% automatically generated by wrap
 function result = new_Test_(obj)
   error('need to compile new_Test_.cpp');
 end

wrap/tests/expected/new_Test_b.cpp

@@ -1,10 +0,0 @@
-// automatically generated by wrap on 2011-Dec-01
-#include <wrap/matlab.h>
-#include <Test.h>
-void mexFunction(int nargout, mxArray *out[], int nargin, const mxArray *in[])
-{
-  checkArguments("new_Test_b",nargout,nargin,1);
-  bool value = unwrap< bool >(in[0]);
-  Test* self = new Test(value);
-  out[0] = wrap_constructed(self,"Test");
-}

wrap/tests/expected/new_Test_b.m

@@ -1,4 +0,0 @@
-% automatically generated by wrap on 2011-Dec-01
-function result = new_Test_b(obj,value)
-  error('need to compile new_Test_b.cpp');
-end

wrap/tests/expected/new_Test_dM.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2012-Jan-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <folder/path/to/Test.h>
 using namespace geometry;

wrap/tests/expected/new_Test_dM.m

@@ -1,4 +1,4 @@
-% automatically generated by wrap on 2012-Jan-15
+% automatically generated by wrap
 function result = new_Test_dM(obj,a,b)
   error('need to compile new_Test_dM.cpp');
 end

wrap/tests/expected_namespaces/@ClassD/ClassD.m

@@ -1,10 +1,11 @@
+% automatically generated by wrap
 classdef ClassD
   properties
     self = 0
   end
   methods
     function obj = ClassD(varargin)
-      if nargin == 0, obj.self = new_ClassD_(); end
+      if (nargin == 0), obj.self = new_ClassD_(); end
       if nargin ~= 13 && obj.self == 0, error('ClassD constructor failed'); end
     end
     function display(obj), obj.print(''); end

wrap/tests/expected_namespaces/@ns1ClassA/ns1ClassA.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef ns1ClassA
   properties
     self = 0

wrap/tests/expected_namespaces/@ns1ClassB/ns1ClassB.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef ns1ClassB
   properties
     self = 0

wrap/tests/expected_namespaces/@ns2ClassA/memberFunction.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2011-Dec-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <path/to/ns2.h>
 #include <path/to/ns2/ClassA.h>

wrap/tests/expected_namespaces/@ns2ClassA/memberFunction.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = memberFunction(obj)
 % usage: obj.memberFunction()
   error('need to compile memberFunction.cpp');

wrap/tests/expected_namespaces/@ns2ClassA/ns2ClassA.m

@@ -1,3 +1,4 @@
+% automatically generated by wrap
 classdef ns2ClassA
   properties
     self = 0

wrap/tests/expected_namespaces/@ns2ClassA/nsArg.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2011-Dec-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <path/to/ns2.h>
 #include <path/to/ns2/ClassA.h>

wrap/tests/expected_namespaces/@ns2ClassA/nsArg.m

@@ -1,3 +1,4 @@
+ automatically generated by wrap
 function result = nsArg(obj,arg)
 % usage: obj.nsArg(arg)
   error('need to compile nsArg.cpp');

wrap/tests/expected_namespaces/@ns2ClassA/nsReturn.cpp

@@ -1,4 +1,4 @@
-// automatically generated by wrap on 2011-Dec-15
+// automatically generated by wrap
 #include <wrap/matlab.h>
 #include <path/to/ns2.h>
 #include <path/to/ns2/ClassA.h>