Cleaned up comments and debugging code
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				|  | @ -291,9 +291,7 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
| 
 | ||||
|     tic(6,"insert"); | ||||
|     BayesTree<Conditional>::clear(); | ||||
|     assert(!this->root_); | ||||
|     this->insert(newRoot); | ||||
|     assert(this->root_); | ||||
|     toc(6,"insert"); | ||||
| 
 | ||||
|     toc(3,"batch"); | ||||
|  | @ -308,6 +306,7 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
| 
 | ||||
|     tic(4,"incremental"); | ||||
| 
 | ||||
|     // 2. Add the new factors \Factors' into the resulting factor graph
 | ||||
|     FastList<Index> affectedAndNewKeys; | ||||
|     affectedAndNewKeys.insert(affectedAndNewKeys.end(), affectedKeys.begin(), affectedKeys.end()); | ||||
|     affectedAndNewKeys.insert(affectedAndNewKeys.end(), newKeys.begin(), newKeys.end()); | ||||
|  | @ -315,16 +314,6 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
|     GaussianFactorGraph factors(*relinearizeAffectedFactors(affectedAndNewKeys)); | ||||
|     toc(1,"relinearizeAffected"); | ||||
| 
 | ||||
| #ifndef NDEBUG | ||||
|     // The relinearized variables should not appear anywhere in the orphans
 | ||||
|     BOOST_FOREACH(boost::shared_ptr<const typename BayesTree<Conditional>::Clique> clique, orphans) { | ||||
|       BOOST_FOREACH(const Index key, (*clique)->frontals()) { | ||||
|         assert(lastRelinVariables_[key] == false); | ||||
|       } | ||||
|     } | ||||
| #endif | ||||
| 
 | ||||
|     //  if(debug) factors.print("Affected factors: ");
 | ||||
|     if(debug) { cout << "Affected keys: "; BOOST_FOREACH(const Index key, affectedKeys) { cout << key << " "; } cout << endl; } | ||||
| 
 | ||||
|     lastAffectedMarkedCount = markedKeys.size(); | ||||
|  | @ -345,35 +334,12 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
|     factors.reserve(factors.size() + cachedBoundary.size()); | ||||
|     // Copy so that we can later permute factors
 | ||||
|     BOOST_FOREACH(const CacheFactor::shared_ptr& cached, cachedBoundary) { | ||||
| #ifndef NDEBUG | ||||
|       BOOST_FOREACH(const Index key, *cached) { | ||||
|         assert(lastRelinVariables_[key] == false); // No variables in the cached factors should be being relinearized
 | ||||
|       } | ||||
| #endif | ||||
|       factors.push_back(GaussianFactor::shared_ptr(new CacheFactor(*cached))); | ||||
|     } | ||||
|     toc(2,"cached"); | ||||
| 
 | ||||
|     // END OF COPIED CODE
 | ||||
| 
 | ||||
| 
 | ||||
|     // 2. Add the new factors \Factors' into the resulting factor graph
 | ||||
|     tic(3,"newfactors"); | ||||
|     if (newFactors) { | ||||
| #ifndef NDEBUG | ||||
|       BOOST_FOREACH(const GaussianFactor::shared_ptr& newFactor, *newFactors) { | ||||
|         bool found = false; | ||||
|         BOOST_FOREACH(const GaussianFactor::shared_ptr& affectedFactor, factors) { | ||||
|           if(newFactor->equals(*affectedFactor, 1e-6)) | ||||
|             found = true; | ||||
|         } | ||||
|         assert(found); | ||||
|       } | ||||
| #endif | ||||
|       //factors.push_back(*newFactors);
 | ||||
|     } | ||||
|     toc(3,"newfactors"); | ||||
| 
 | ||||
|     // 3. Re-order and eliminate the factor graph into a Bayes net (Algorithm [alg:eliminate]), and re-assemble into a new Bayes tree (Algorithm [alg:BayesTree])
 | ||||
| 
 | ||||
|     tic(4,"reorder and eliminate"); | ||||
|  | @ -399,8 +365,6 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
|     // delta vector, the global ordering, and the factors we're about to
 | ||||
|     // re-eliminate.  The reordered variables are also mentioned in the
 | ||||
|     // orphans and the leftover cached factors.
 | ||||
|     // NOTE: We have shared_ptr's to cached factors that we permute here, thus we
 | ||||
|     // undo this permutation after elimination.
 | ||||
|     tic(3,"permute global variable index"); | ||||
|     variableIndex_.permute(partialSolveResult.fullReordering); | ||||
|     toc(3,"permute global variable index"); | ||||
|  | @ -446,11 +410,6 @@ boost::shared_ptr<FastSet<Index> > ISAM2<Conditional, Values>::recalculate( | |||
| 
 | ||||
|     return affectedKeysSet; | ||||
|   } | ||||
| 
 | ||||
|   // Output: BayesTree(this)
 | ||||
| 
 | ||||
| //  boost::shared_ptr<set<Index> > affectedKeysSet(new set<Index>());
 | ||||
| //  affectedKeysSet->insert(affectedKeys.begin(), affectedKeys.end());
 | ||||
| } | ||||
| 
 | ||||
| /* ************************************************************************* */ | ||||
|  |  | |||
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